Stem-loop eca-mir-324

Accession

MI0012780

Description

Equus caballus eca-mir-324 precursor miRNA

Literature search

1 open access papers mention eca-mir-324
(2 sentences)

Sequence

58 reads, 9 reads per million, 1 experiments

cugacuaugccucccCGCAUCCCCUAGGGCAUUGGUGUaaagcuggagacCCACUGCCCCAGGUGCUGCUGGggguuguaguc
..(((((((.(((((.(((.(.(((.(((((.(((.((..........))))).))))).))).).))).))))).)))))))

Structure

cu       c     C   U C   A     U   U  aaag 
  gacuaug cuccc GCA C CCU GGGCA UGG GU    c
  ||||||| ||||| ||| | ||| ||||| ||| ||     
  cugaugu gggGG CGU G GGA CCCGU ACC ca    u
--       u     U   C U   C     C   -  gagg 

Annotation confidence Not enough data

Genome context

chr11: 50242526-50242608 [-]

Mature eca-miR-324-5p

• Accession: MIMAT0013033
• Description: Equus caballus eca-miR-324-5p mature miRNA
• Sequence: 16 - CGCAUCCCCUAGGGCAUUGGUGU - 38
• Evidence: not_experimental

Mature eca-miR-324-3p

• Accession: MIMAT0013034
• Description: Equus caballus eca-miR-324-3p mature miRNA
• Sequence: 51 - CCACUGCCCCAGGUGCUGCUGG - 72
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131