Stem-loop eca-mir-338

Accession

MI0012781

Description

Equus caballus eca-mir-338 precursor miRNA

Sequence

53 reads, 8 reads per million, 1 experiments

cAACAAUAUCCUGGUGCUGAGUGaugacacacgcaacUCCAGCAUCAGUGAUUUUGUUG
((((((.(((((((((((((((..((.....))..))).))))))))).))).))))))

Structure

      U   -         -   Ga  a 
cAACAA AUC CUGGUGCUG AGU  ug c
|||||| ||| ||||||||| |||  || a
GUUGUU UAG GACUACGAC Uca  gc c
      U   U         C   ac  a 

Annotation confidence Not enough data

Genome context

chr11: 1976416-1976474 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-338

Mature eca-miR-338-5p

• Accession: MIMAT0013035
• Description: Equus caballus eca-miR-338-5p mature miRNA
• Sequence: 2 - AACAAUAUCCUGGUGCUGAGUG - 23
• Evidence: not_experimental

Mature eca-miR-338-3p

• Accession: MIMAT0013036
• Description: Equus caballus eca-miR-338-3p mature miRNA
• Sequence: 38 - UCCAGCAUCAGUGAUUUUGUUG - 59
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131