Stem-loop eca-mir-338

Accession

MI0012781

Description

Equus caballus eca-mir-338 precursor miRNA

Literature search

2 open access papers mention eca-mir-338
(2 sentences)

Sequence

56548 reads, 584.0 reads per million, 191 experiments

cAACAAUAUCCUGGUGCUGAGUGAugacacacgcaacUCCAGCAUCAGUGAUUUUGUUG
((((((.(((((((((((((((..((.....))..))).))))))))).))).))))))

Structure

      U   -         -   GA  a 
cAACAA AUC CUGGUGCUG AGU  ug c
|||||| ||| ||||||||| |||  || a
GUUGUU UAG GACUACGAC Uca  gc c
      U   U         C   ac  a 

Annotation confidence High

Genome context

11: 1969260-1969318 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-338

Mature eca-miR-338-5p

• Accession: MIMAT0013035
• Description: Equus caballus eca-miR-338-5p mature miRNA
• Sequence: 2 - AACAAUAUCCUGGUGCUGAGUGA - 24
• Evidence: not_experimental

Mature eca-miR-338-3p

• Accession: MIMAT0013036
• Description: Equus caballus eca-miR-338-3p mature miRNA
• Sequence: 38 - UCCAGCAUCAGUGAUUUUGUUG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131