Stem-loop eca-mir-454

Accession

MI0012786

Description

Equus caballus eca-mir-454 precursor miRNA

Literature search

2 open access papers mention eca-mir-454
(12 sentences)

Sequence

45346 reads, 138.0 reads per million, 152 experiments

agaACCCUAUCGAUAUUGUCUCUGCUguguaaaucgcucugagUAGUGCAAUAUUGCUUAUAGGGUuuu
.((((((((((((((((((..((((((((.....)))....))))).)))))))))...))))))))).

Structure

a         ---         CU     ----   u 
 gaACCCUAU   CGAUAUUGU  CUGCU    gug a
 |||||||||   |||||||||  |||||    ||| a
 uuUGGGAUA   GUUAUAACG  GAUga    cgc a
u         UUC         -U     gucu   u 

Annotation confidence High

Genome context

11: 33581059-33581127 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-454

Mature eca-miR-454-5p

• Accession: MIMAT0051389
• Description: Equus caballus eca-miR-454-5p mature miRNA
• Sequence: 4 - ACCCUAUCGAUAUUGUCUCUGCU - 26
• Evidence: not_experimental

Mature eca-miR-454-3p

• Accession: MIMAT0013042
• Description: Equus caballus eca-miR-454-3p mature miRNA
• Sequence: 44 - UAGUGCAAUAUUGCUUAUAGGGU - 66
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131