Stem-loop eca-mir-497

Accession

MI0012787

Description

Equus caballus eca-mir-497 precursor miRNA

Literature search

5 open access papers mention eca-mir-497
(11 sentences)

Sequence

248421 reads, 293.0 reads per million, 188 experiments

CAGCAGCACACUGUGGUUUGUAcggcacuguggccacgucCAAACCACACUGUGGUGUU
.((((.((((.(((((((((.(((((......)))..)).))))))))).)))).))))

Structure

C    G    C         U  --   ac 
 AGCA CACA UGUGGUUUG Ac  ggc  u
 |||| |||| ||||||||| ||  |||   
 UUGU GUGU ACACCAAAC ug  ccg  g
-    G    C         c  ca   gu 

Annotation confidence Medium

Genome context

11: 50388945-50389003 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-497

Mature eca-miR-497-5p

• Accession: MIMAT0013043
• Description: Equus caballus eca-miR-497-5p mature miRNA
• Sequence: 1 - CAGCAGCACACUGUGGUUUGUA - 22
• Evidence: experimental ; Illumina [1]

Mature eca-miR-497-3p

• Accession: MIMAT0051390
• Description: Equus caballus eca-miR-497-3p mature miRNA
• Sequence: 41 - CAAACCACACUGUGGUGUU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131