Stem-loop eca-mir-192

Accession

MI0012792

Description

Equus caballus eca-mir-192 precursor miRNA

Literature search

11 open access papers mention eca-mir-192
(14 sentences)

Sequence

1767026 reads, 8673.0 reads per million, 213 experiments

CUGACCUAUGAAUUGACAGCCAGugcucuugucucccucuggCUGCCAAUUCCAUAGGUCA
.((((((((((((((.(((((((...............))))))).))))).)))))))))

Structure

C         -     A       ugcucu 
 UGACCUAUG AAUUG CAGCCAG      u
 ||||||||| ||||| |||||||      g
 ACUGGAUAC UUAAC GUCgguc      u
-         C     C       ucccuc 

Annotation confidence Medium

Genome context

12: 28723076-28723136 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-192

Mature eca-miR-192-5p

• Accession: MIMAT0013049
• Description: Equus caballus eca-miR-192-5p mature miRNA
• Sequence: 1 - CUGACCUAUGAAUUGACAGCCAG - 23
• Evidence: experimental ; Illumina [1]

Mature eca-miR-192-3p

• Accession: MIMAT0051392
• Description: Equus caballus eca-miR-192-3p mature miRNA
• Sequence: 43 - CUGCCAAUUCCAUAGGUCA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131