Stem-loop eca-mir-194a

Accession

MI0012793

Description

Equus caballus eca-mir-194a precursor miRNA

Literature search

1 open access papers mention eca-mir-194a
(1 sentences)

Sequence

307572 reads, 387.0 reads per million, 187 experiments

gggcucccacccccUGUAACAGCAACUCCAUGUGGAAGugcccacugguuCCAGUGGGGCUGCUGUUAUCUGgggcgggggccag
.(((((((.((((..(((((((((.((((((.((((...(((....))))))))))))).)))))))))..)))).)))))))..

Structure

-g       a    cU         A      G    AGu   c 
  ggcuccc cccc  GUAACAGCA CUCCAU UGGA   gcc a
  ||||||| ||||  ||||||||| |||||| ||||   |||  
  ccggggg gggG  UAUUGUCGU GGGGUG ACCu   ugg c
ga       c    UC         C      -    ---   u 

Annotation confidence High

Genome context

12: 28723267-28723351 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-194a

Mature eca-miR-194a-5p

• Accession: MIMAT0013050
• Description: Equus caballus eca-miR-194a-5p mature miRNA
• Sequence: 15 - UGUAACAGCAACUCCAUGUGGAAG - 38
• Evidence: experimental ; Illumina [1]

Mature eca-miR-194a-3p

• Accession: MIMAT0051393
• Description: Equus caballus eca-miR-194a-3p mature miRNA
• Sequence: 51 - CCAGUGGGGCUGCUGUUAUCUG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131