Stem-loop eca-mir-193b

Accession

MI0012800

Description

Equus caballus eca-mir-193b precursor miRNA

Literature search

10 open access papers mention eca-mir-193b
(24 sentences)

Sequence

544934 reads, 408.0 reads per million, 199 experiments

cagaauCGGGGUUUUGAGGGCGAGAUGAguuuauguuuuauccAACUGGCCCACAAAGUCCCGCUuuug
(((((.((((((((((.((((.((.((.((.........)).)).)).)))).)))))))))).)))))

Structure

     u          A    G  A  A  uua 
cagaa CGGGGUUUUG GGGC AG UG gu   u
||||| |||||||||| |||| || || ||   g
guuuU GCCCUGAAAC CCCG UC Ac ua   u
     C          A    G  A  c  uuu 

Annotation confidence High

Genome context

13: 31850707-31850775 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-193b

Mature eca-miR-193b-5p

• Accession: MIMAT0051398
• Description: Equus caballus eca-miR-193b-5p mature miRNA
• Sequence: 7 - CGGGGUUUUGAGGGCGAGAUGA - 28
• Evidence: not_experimental

Mature eca-miR-193b-3p

• Accession: MIMAT0013056
• Description: Equus caballus eca-miR-193b-3p mature miRNA
• Sequence: 44 - AACUGGCCCACAAAGUCCCGCU - 65
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131