Stem-loop eca-mir-365-2

Accession

MI0012802

Description

Equus caballus eca-mir-365-2 precursor miRNA

Sequence

432093 reads, 320.0 reads per million, 166 experiments

accgcagggaaaaugAGGGACUUUUGGGGGCAGAUGUGUuuccauuccacuaucaUAAUGCCCCUAAAAAUCCUUAUUgcucuugca
...((((((..((((((((..(((((((((((((((((.........))).)))....))))))))))).))))))))..)))))).

Structure

acc      aa        AC           ----   -   Uuu 
   gcaggg  aaugAGGG  UUUUGGGGGCA    GAU GUG   c
   ||||||  ||||||||  |||||||||||    ||| |||   c
   cguucu  UUAUUCCU  AAAAUCCCCGU    cua cac   a
--a      cg        -A           AAUa   u   cuu 

Annotation confidence Medium

Genome context

13: 31845857-31845943 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-365-2

Mature eca-miR-365-2-5p

• Accession: MIMAT0051387
• Description: Equus caballus eca-miR-365-2-5p mature miRNA
• Sequence: 16 - AGGGACUUUUGGGGGCAGAUGUGU - 39
• Evidence: experimental

Mature eca-miR-365-3p

• Accession: MIMAT0013038
• Description: Equus caballus eca-miR-365-3p mature miRNA
• Sequence: 56 - UAAUGCCCCUAAAAAUCCUUAUU - 78
• Evidence: experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131