Stem-loop eca-mir-1271a

Accession

MI0012806

Description

Equus caballus eca-mir-1271a precursor miRNA

Sequence

424771 reads, 451.0 reads per million, 180 experiments

CUUGGCACCUCGUAAGCACUCAguaaauacuuguugAGUGCCUGCUGUGUGCCAGgc
(((((((((..(((.(((((((((((....))))))))))).))).).)))))))).

Structure

-        - UC   A           a 
 CUUGGCAC C  GUA GCACUCAguaa u
 |||||||| |  ||| |||||||||||  
 gGACCGUG G  CGU CGUGAguuguu a
c        U -U   C           c 

Annotation confidence Medium

Genome context

14: 4978546-4978602 [-]

Mature eca-miR-1271a-5p

• Accession: MIMAT0013062
• Description: Equus caballus eca-miR-1271a-5p mature miRNA
• Sequence: 1 - CUUGGCACCUCGUAAGCACUCA - 22
• Evidence: not_experimental

Mature eca-miR-1271a-3p

• Accession: MIMAT0051402
• Description: Equus caballus eca-miR-1271a-3p mature miRNA
• Sequence: 37 - AGUGCCUGCUGUGUGCCAG - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131