Stem-loop eca-mir-143

Accession

MI0012807

Description

Equus caballus eca-mir-143 precursor miRNA

Literature search

20 open access papers mention eca-mir-143
(66 sentences)

Sequence

84199691 reads, 59305.0 reads per million, 239 experiments

gcccgaGGUGCAGUGCUGCAUCUCUGGucaguugggagucUGAGAUGAAGCACUGUAGCUCagg
.((.(((.(((((((((.((((((.((((......)).)).)))))).))))))))).))).))

Structure

g  c   G         G      U  -  ag 
 cc gaG UGCAGUGCU CAUCUC GG uc  u
 || ||| ||||||||| |||||| || ||   
 gg CUC AUGUCACGA GUAGAG cu ag  u
-  a   G         A      U  g  gg 

Annotation confidence High

Genome context

14: 27744250-27744313 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-143

Mature eca-miR-143-5p

• Accession: MIMAT0061104
• Description: Equus caballus eca-miR-143-5p mature miRNA
• Sequence: 7 - GGUGCAGUGCUGCAUCUCUGG - 27
• Evidence: not_experimental

Mature eca-miR-143-3p

• Accession: MIMAT0013063
• Description: Equus caballus eca-miR-143-3p mature miRNA
• Sequence: 41 - UGAGAUGAAGCACUGUAGCUC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131