Stem-loop eca-mir-145

Accession

MI0012808

Description

Equus caballus eca-mir-145 precursor miRNA

Literature search

29 open access papers mention eca-mir-145
(48 sentences)

Sequence

1304809 reads, 1561.0 reads per million, 223 experiments

cucacgGUCCAGUUUUCCCAGGAAUCCCUUagaugcuaagauggGGAUUCCUGGAAAUACUGUUCUugag
((((.((..((((.((.((((((((((((.............)))))))))))).)).))))..))))))

Structure

    c  UC    U  C            Uagau 
cuca gG  CAGU UU CCAGGAAUCCCU     g
|||| ||  |||| || ||||||||||||     c
gagu UC  GUCA AA GGUCCUUAGGgg     u
    -  UU    U  A            uagaa 

Annotation confidence High

Genome context

14: 27742822-27742891 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-145

Mature eca-miR-145-5p

• Accession: MIMAT0013064
• Description: Equus caballus eca-miR-145-5p mature miRNA
• Sequence: 7 - GUCCAGUUUUCCCAGGAAUCCCUU - 30
• Evidence: not_experimental

Mature eca-miR-145-3p

• Accession: MIMAT0061105
• Description: Equus caballus eca-miR-145-3p mature miRNA
• Sequence: 45 - GGAUUCCUGGAAAUACUGUUCU - 66
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131