Stem-loop eca-mir-146a

Accession

MI0012809

Description

Equus caballus eca-mir-146a precursor miRNA

Literature search

30 open access papers mention eca-mir-146a
(86 sentences)

Sequence

1020430 reads, 1769.0 reads per million, 211 experiments

agcuuUGAGAACUGAAUUCCAUGGGUUgugucagcgucagACCUGUGAAGUUCAGUUCUUCAgcu
((((..((((((((((((.((((((((.((.......)))))))))).)))))))))))).))))

Structure

    uU            C        g  uc 
agcu  GAGAACUGAAUU CAUGGGUU ug  a
||||  |||||||||||| |||||||| ||  g
ucgA  UUCUUGACUUGA GUGUCCAg ac  c
    -C            A        -  ug 

Annotation confidence High

Genome context

14: 18375048-18375112 [-]

Mature eca-miR-146a-5p

• Accession: MIMAT0013065
• Description: Equus caballus eca-miR-146a-5p mature miRNA
• Sequence: 6 - UGAGAACUGAAUUCCAUGGGUU - 27
• Evidence: not_experimental

Mature eca-miR-146a-3p

• Accession: MIMAT0051403
• Description: Equus caballus eca-miR-146a-3p mature miRNA
• Sequence: 41 - ACCUGUGAAGUUCAGUUCUUCA - 62
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131