Stem-loop eca-mir-340

Accession

MI0012811

Description

Equus caballus eca-mir-340 precursor miRNA

Sequence

6144 reads, 930 reads per million, 1 experiments

ggUUAUAAAGCAAUGAGACUGAUUgucaugugucgcuugugggaUCCGUCUCAGUUACUUUAUAGCC
((((((((((...((((((.((((.(((((.......))))))))).))))))....))))))))))

Structure

          -CAA      U    g     ug 
ggUUAUAAAG    UGAGAC GAUU ucaug  u
||||||||||    |||||| |||| |||||  c
CCGAUAUUUC    ACUCUG CUag ggugu  g
          AUUG      C    -     uc 

Annotation confidence High

Genome context

chr14: 2525731-2525797 [+]

Mature eca-miR-340-5p

• Accession: MIMAT0013066
• Description: Equus caballus eca-miR-340-5p mature miRNA
• Sequence: 3 - UUAUAAAGCAAUGAGACUGAUU - 24
• Evidence: not_experimental

Mature eca-miR-340-3p

• Accession: MIMAT0013067
• Description: Equus caballus eca-miR-340-3p mature miRNA
• Sequence: 45 - UCCGUCUCAGUUACUUUAUAGCC - 67
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131