Stem-loop eca-mir-378

Accession

MI0012812

Description

Equus caballus eca-mir-378 precursor miRNA

Literature search

12 open access papers mention eca-mir-378
(94 sentences)

Sequence

28442466 reads, 19349.0 reads per million, 239 experiments

agggCUCCUGACUCCAGGUCCUGUGUguuaccucgaaauagcACUGGACUUGGAGUCAGAAGGCcu
(((.((.((((((((((((((.((((..(........)..)))).)))))))))))))).)).)))

Structure

   g  C              U    gu acc 
agg CU CUGACUCCAGGUCC GUGU  u   u
||| || |||||||||||||| ||||  |    
ucC GA GACUGAGGUUCAGG CAcg  a   c
   G  A              U    au aag 

Annotation confidence High

Genome context

14: 27496581-27496646 [-]

Mature eca-miR-378-5p

• Accession: MIMAT0051406
• Description: Equus caballus eca-miR-378-5p mature miRNA
• Sequence: 5 - CUCCUGACUCCAGGUCCUGUGU - 26
• Evidence: not_experimental

Mature eca-miR-378-3p

• Accession: MIMAT0013068
• Description: Equus caballus eca-miR-378-3p mature miRNA
• Sequence: 43 - ACUGGACUUGGAGUCAGAAGGC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131