Stem-loop eca-mir-874

Accession

MI0012813

Description

Equus caballus eca-mir-874 precursor miRNA

Literature search

4 open access papers mention eca-mir-874
(54 sentences)

Sequence

21206 reads, 83.0 reads per million, 164 experiments

gCGGCCCCACGCACCAGGGUAAGAgagacucucgcuucCUGCCCUGGCCCGAGGGACCGA
.(((.(((.((..((((((((((.(((...))).))...))))))))..)).))).))).

Structure

g   C   A  CA        ---  A   a 
 CGG CCC CG  CCAGGGUA   AG gag  
 ||| ||| ||  ||||||||   || ||| c
 GCC GGG GC  GGUCCCGU   uc cuc  
A   A   A  CC        Ccu  g   u 

Annotation confidence High

Genome context

14: 38023413-38023472 [+]

Mature eca-miR-874-5p

• Accession: MIMAT0061106
• Description: Equus caballus eca-miR-874-5p mature miRNA
• Sequence: 2 - CGGCCCCACGCACCAGGGUAAGA - 24
• Evidence: not_experimental

Mature eca-miR-874-3p

• Accession: MIMAT0013069
• Description: Equus caballus eca-miR-874-3p mature miRNA
• Sequence: 39 - CUGCCCUGGCCCGAGGGACCGA - 60
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131