Stem-loop eca-mir-1301

Accession

MI0012815

Description

Equus caballus eca-mir-1301 precursor miRNA

Literature search

1 open access papers mention eca-mir-1301
(1 sentences)

Sequence

5890 reads, 17.0 reads per million, 156 experiments

uguggggGGUCACUCUAGGCACCGCAGCacugugcuggggaugUUGCAGCUGCCUGGGAGUGAUUUCacaca
((((.(((((((((((((((((.((((((((.......)).)))))).).))))).))))))))))).))))

Structure

    g           -     - C      -  gu 
ugug ggGGUCACUCU AGGCA C GCAGCa cu  g
|||| ||||||||||| ||||| | |||||| ||  c
acac CUUUAGUGAGG UCCGU G CGUUgu gg  u
    a           G     C A      a  gg 

Annotation confidence High

Genome context

15: 71646910-71646981 [+]

Mature eca-miR-1301-5p

• Accession: MIMAT0051407
• Description: Equus caballus eca-miR-1301-5p mature miRNA
• Sequence: 8 - GGUCACUCUAGGCACCGCAGC - 28
• Evidence: not_experimental

Mature eca-miR-1301-3p

• Accession: MIMAT0013070
• Description: Equus caballus eca-miR-1301-3p mature miRNA
• Sequence: 44 - UUGCAGCUGCCUGGGAGUGAUUUC - 67
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131