Stem-loop eca-mir-216b

Accession

MI0012818

Description

Equus caballus eca-mir-216b precursor miRNA

Literature search

1 open access papers mention eca-mir-216b
(19 sentences)

Sequence

355 reads, 5.0 reads per million, 91 experiments

guggcagacuggaAAAUCUCUGCAGGCAAAUGUGAugucacuaaagaaaucacacacuuacccguagagauucuacagucugacau
(((.(((((((...(((((((((.((.((.((((((.((......)).))))))...)).)).)))))))))...))))))).)))

Structure

   g       gaA         A  C  --A      g  ac 
gug cagacug   AAUCUCUGC GG AA   UGUGAu uc  u
||| |||||||   ||||||||| || ||   |||||| ||   
uac gucugac   uuagagaug cc uu   acacua ag  a
   a       auc         c  a  cac      a  aa 

Annotation confidence Not enough data

Genome context

15: 45348546-45348631 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-216b

Mature eca-miR-216b-5p

• Accession: MIMAT0013073
• Description: Equus caballus eca-miR-216b-5p mature miRNA
• Sequence: 14 - AAAUCUCUGCAGGCAAAUGUGA - 35
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131