Stem-loop eca-mir-135a

Accession

MI0012823

Description

Equus caballus eca-mir-135a precursor miRNA

Literature search

8 open access papers mention eca-mir-135a
(21 sentences)

Sequence

7312 reads, 32.0 reads per million, 115 experiments

cUAUGGCUUUUUAUUCCUAUGUGAuucuacugcucacucAUAUAGGGAUUGGAGCCGUGG
((((((((((..((((((((((((.............)))))))))))).))))))))))

Structure

          UU            uucua 
cUAUGGCUUU  AUUCCUAUGUGA     c
||||||||||  ||||||||||||     u
GGUGCCGAGG  UAGGGAUAUAcu     g
          -U            cacuc 

Annotation confidence High

Genome context

16: 36933008-36933067 [+]

Mature eca-miR-135a-5p

• Accession: MIMAT0013078
• Description: Equus caballus eca-miR-135a-5p mature miRNA
• Sequence: 2 - UAUGGCUUUUUAUUCCUAUGUGA - 24
• Evidence: not_experimental

Mature eca-miR-135a-3p

• Accession: MIMAT0051410
• Description: Equus caballus eca-miR-135a-3p mature miRNA
• Sequence: 40 - AUAUAGGGAUUGGAGCCGUGG - 60
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131