Stem-loop eca-mir-15a

Accession

MI0012829

Description

Equus caballus eca-mir-15a precursor miRNA

Literature search

15 open access papers mention eca-mir-15a
(36 sentences)

Sequence

418096 reads, 413.0 reads per million, 193 experiments

UAGCAGCACAUAAUGGUUUGUGgauuuugaaaaggugCAGGCCAUAUUGUGCUGCCU
..((((((((..((((((((((.............))))))))))..))))))))..

Structure

UA        UA          gauuu 
  GCAGCACA  AUGGUUUGUG     u
  ||||||||  ||||||||||     g
  CGUCGUGU  UACCGGACgu     a
UC        UA          ggaaa 

Annotation confidence High

Genome context

17: 21041772-21041828 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-15a

Mature eca-miR-15a-5p

• Accession: MIMAT0013083
• Description: Equus caballus eca-miR-15a-5p mature miRNA
• Sequence: 1 - UAGCAGCACAUAAUGGUUUGUG - 22
• Evidence: not_experimental

Mature eca-miR-15a-3p

• Accession: MIMAT0051413
• Description: Equus caballus eca-miR-15a-3p mature miRNA
• Sequence: 38 - CAGGCCAUAUUGUGCUGCCU - 57
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131