Stem-loop eca-mir-16-2

Accession

MI0012830

Description

Equus caballus eca-mir-16-2 precursor miRNA

Literature search

3 open access papers mention eca-mir-16-2
(4 sentences)

Sequence

5935086 reads, 7087.0 reads per million, 230 experiments

UAGCAGCACGUAAAUAUUGGCGUuaagauucuaaaauuaucuCCAGUAUUAACUGUGCUGCUG
(((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))

Structure

         -  A        C U   gauu 
UAGCAGCAC GU AAUAUUGG G uaa    c
||||||||| || |||||||| | |||     
GUCGUCGUG CA UUAUGACC c auu    u
         U  A        u u   aaaa 

Annotation confidence High

Genome context

17: 21041912-21041974 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-16-2

Mature eca-miR-16-5p

• Accession: MIMAT0012955
• Description: Equus caballus eca-miR-16-5p mature miRNA
• Sequence: 1 - UAGCAGCACGUAAAUAUUGGCGU - 23
• Evidence: not_experimental

Mature eca-miR-16-2-3p

• Accession: MIMAT0051344
• Description: Equus caballus eca-miR-16-2-3p mature miRNA
• Sequence: 43 - CCAGUAUUAACUGUGCUGCUG - 63
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131