Stem-loop eca-mir-1248

Accession

MI0012839

Description

Equus caballus eca-mir-1248 precursor miRNA

Gene family

MIPF0000622; mir-1248

Literature search

2 open access papers mention eca-mir-1248
(2 sentences)

Sequence

2 reads, 0 reads per million, 1 experiments

UCCUUCUUGUAUAAGCACUGUGCUAAAauugcagaaacuaggaucacuucuugguuuuuguaauaaugcuagcagaguacacacaagaagaaa
..((((((((....(.(((.(((((..((((((((((((((((.....)))))))))))))))).....))))).))).)..))))))))...

Structure

-UC        AUAA C   G     ---AA                u 
   CUUCUUGU    G ACU UGCUA     auugcagaaacuagga c
   ||||||||    | ||| |||||     |||||||||||||||| a
   gaagaaca    c uga acgau     uaauguuuuugguucu c
aaa        --ca a   g     cguaa                u 

Annotation confidence Not enough data

Genome context

chr19: 24793833-24793925 [+]

Mature eca-miR-1248

• Accession: MIMAT0013091
• Description: Equus caballus eca-miR-1248 mature miRNA
• Sequence: 1 - UCCUUCUUGUAUAAGCACUGUGCUAAA - 27
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131