Stem-loop eca-mir-133b

Accession

MI0012844

Description

Equus caballus eca-mir-133b precursor miRNA

Literature search

15 open access papers mention eca-mir-133b
(47 sentences)

Sequence

47776635 reads, 29109.0 reads per million, 174 experiments

ugGCUGGUCAAACGGAACCAAGUCcgucuuccugagaggUUUGGUCCCCUUCAACCAGCUA
((((((((..((.((.((((((.((.((((...)))))))))))).)).))..))))))))

Structure

        CA  C  A      U  g    c 
ugGCUGGU  AA GG ACCAAG Cc ucuu  
||||||||  || || |||||| || |||| c
AUCGACCA  UU CC UGGUUU gg agag  
        AC  C  C      -  -    u 

Annotation confidence High

Genome context

20: 50841419-50841479 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-133b

Mature eca-miR-133b-5p

• Accession: MIMAT0051425
• Description: Equus caballus eca-miR-133b-5p mature miRNA
• Sequence: 3 - GCUGGUCAAACGGAACCAAGUC - 24
• Evidence: not_experimental

Mature eca-miR-133b-3p

• Accession: MIMAT0013097
• Description: Equus caballus eca-miR-133b-3p mature miRNA
• Sequence: 40 - UUUGGUCCCCUUCAACCAGCUA - 61
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131