Stem-loop eca-let-7d-1

Accession

MI0012859

Description

Equus caballus eca-let-7d-1 precursor miRNA

Literature search

13 open access papers mention eca-let-7d-1
(21 sentences)

Sequence

1558326 reads, 4652.0 reads per million, 238 experiments

ccuaggaAGAGGUAGUAGGUUGCAUAGUUUuagggcagggauuuugcccacaaggagauaaCUAUACGACCUGCUGCCUUUCUUagg
(((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))))

Structure

       A              C      -------Uua      g 
ccuagga GAGGUAGUAGGUUG AUAGUU          gggcag g
||||||| |||||||||||||| ||||||          |||||| a
ggaUUCU UUCCGUCGUCCAGC UAUCaa          cccguu u
       -              A      uagaggaaca      u 

Annotation confidence High

Genome context

23: 53957801-53957887 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-let-7d-1

Mature eca-let-7d-5p

• Accession: MIMAT0013110
• Description: Equus caballus eca-let-7d-5p mature miRNA
• Sequence: 8 - AGAGGUAGUAGGUUGCAUAGUUU - 30
• Evidence: not_experimental

Mature eca-let-7d-3p

• Accession: MIMAT0061108
• Description: Equus caballus eca-let-7d-3p mature miRNA
• Sequence: 62 - CUAUACGACCUGCUGCCUUUCUU - 84
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131