Stem-loop eca-let-7f

Accession

MI0012860

Description

Equus caballus eca-let-7f precursor miRNA

Literature search

19 open access papers mention eca-let-7f
(38 sentences)

Sequence

18432302 reads, 15760.0 reads per million, 238 experiments

ucggagUGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCcuga
((((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).)))))

Structure

    a U                       ---------       u 
ucgg g GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
|||| | |||||||||||||||||||||||         ||||||| a
aguc C UUCCGUUAUCUAACAUAUCaaua         ucccauu u
    - C                       gaggacuug       u 

Annotation confidence High

Genome context

23: 53959741-53959827 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-let-7f

Mature eca-let-7f-5p

• Accession: MIMAT0013111
• Description: Equus caballus eca-let-7f-5p mature miRNA
• Sequence: 7 - UGAGGUAGUAGAUUGUAUAGUU - 28
• Evidence: not_experimental

Mature eca-let-7f-3p

• Accession: MIMAT0051432
• Description: Equus caballus eca-let-7f-3p mature miRNA
• Sequence: 63 - CUAUACAAUCUAUUGCCUUCC - 83
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131