Stem-loop eca-mir-23b

Accession

MI0012863

Description

Equus caballus eca-mir-23b precursor miRNA

Literature search

12 open access papers mention eca-mir-23b
(19 sentences)

Sequence

1927108 reads, 2303.0 reads per million, 239 experiments

ggcugcuuGGGUUCCUGGCAUGCUGAUUUgugacuuaagauuaaaAUCACAUUGCCAGGGAUUACCACgcaacc
((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).))

Structure

  c   u   --          -  C      gugacu 
gg ugc uGG  GUUCCUGGCA UG UGAUUU      u
|| ||| |||  |||||||||| || ||||||       
cc acg ACC  UAGGGACCGU AC ACUAaa      a
  a   C   AU          U  -      auuaga 

Annotation confidence High

Genome context

23: 2132611-2132684 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-23b

Mature eca-miR-23b-5p

• Accession: MIMAT0051435
• Description: Equus caballus eca-miR-23b-5p mature miRNA
• Sequence: 9 - GGGUUCCUGGCAUGCUGAUUU - 29
• Evidence: not_experimental

Mature eca-miR-23b-3p

• Accession: MIMAT0013113
• Description: Equus caballus eca-miR-23b-3p mature miRNA
• Sequence: 46 - AUCACAUUGCCAGGGAUUACCAC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131