Stem-loop eca-mir-27b

Accession

MI0012865

Description

Equus caballus eca-mir-27b precursor miRNA

Literature search

17 open access papers mention eca-mir-27b
(27 sentences)

Sequence

26026297 reads, 24012.0 reads per million, 239 experiments

aggugcAGAGCUUAGCUGAUUGGUGAACAgugacugguuuccgcuuugUUCACAGUGGCUAAGUUCUGCAccu
(((((((((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))))))))

Structure

                 G    G       ugac   u 
aggugcAGAGCUUAGCU AUUG UGAACAg    ugg  
||||||||||||||||| |||| |||||||    ||| u
uccACGUCUUGAAUCGG UGAC ACUUguu    gcc  
                 -    -       --uc   u 

Annotation confidence High

Genome context

23: 2132383-2132455 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-27b

Mature eca-miR-27b-5p

• Accession: MIMAT0061109
• Description: Equus caballus eca-miR-27b-5p mature miRNA
• Sequence: 7 - AGAGCUUAGCUGAUUGGUGAACA - 29
• Evidence: not_experimental

Mature eca-miR-27b-3p

• Accession: MIMAT0013114
• Description: Equus caballus eca-miR-27b-3p mature miRNA
• Sequence: 49 - UUCACAGUGGCUAAGUUCUGCA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131