Stem-loop eca-mir-27b

Accession

MI0012865

Description

Equus caballus eca-mir-27b precursor miRNA

Literature search

2 open access papers mention eca-mir-27b
(3 sentences)

Sequence

66183 reads, 10018 reads per million, 1 experiments

aggugcagagcuuagcugauuggugaacagugacugguuuccgcuuugUUCACAGUGGCUAAGUUCUGCaccu
(((((((((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))))))))

Structure

                 g    g       ugac   u 
aggugcagagcuuagcu auug ugaacag    ugg  
||||||||||||||||| |||| |||||||    ||| u
uccaCGUCUUGAAUCGG UGAC ACUUguu    gcc  
                 -    -       --uc   u 

Annotation confidence High

Genome context

chr23: 2317696-2317768 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-27b

Mature eca-miR-27b

• Accession: MIMAT0013114
• Description: Equus caballus eca-miR-27b mature miRNA
• Sequence: 49 - UUCACAGUGGCUAAGUUCUGC - 69
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131