Stem-loop eca-mir-1185

Accession

MI0012873

Description

Equus caballus eca-mir-1185 precursor miRNA

Sequence

6500 reads, 8.0 reads per million, 109 experiments

uuugguacuugaagAGAGGAUACCCUUUGUAUGUUcacuucauuaaugacgaAUAUACAGGGGGAGACUCUUAUuugcguaucaaa
.(((((((.(((((((((..(.((((((((((((((...(((....))).)))))))))))))))..))))).)))).))))))).

Structure

u       u    -     GA A              acu   u 
 uugguac ugaa gAGAG  U CCCUUUGUAUGUUc   uca u
 ||||||| |||| |||||  | ||||||||||||||   |||  
 aacuaug guuU UUCUC  A GGGGGACAUAUAag   agu a
a       c    A     AG -              --c   a 

Annotation confidence High

Genome context

24: 43352983-43353068 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from eca-mir-1185

Mature eca-miR-1185-5p

• Accession: MIMAT0013123
• Description: Equus caballus eca-miR-1185-5p mature miRNA
• Sequence: 15 - AGAGGAUACCCUUUGUAUGUU - 35
• Evidence: not_experimental

Mature eca-miR-1185-3p

• Accession: MIMAT0051438
• Description: Equus caballus eca-miR-1185-3p mature miRNA
• Sequence: 53 - AUAUACAGGGGGAGACUCUUAU - 74
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131