Stem-loop eca-mir-1193

Accession

MI0012874

Description

Equus caballus eca-mir-1193 precursor miRNA

Sequence

1200 reads, 3.0 reads per million, 101 experiments

ugaagggacuguagugccauccacucugcaggguagcugagGGGAUGGUAGACCGGUGACGUGcacuucauuuaugaugUAGGUCACCCGUUUGACUAUCCaucagcacccaguccaucug
.((..(((((((((.(.......).)))).((((.(((((..(((((((((((.((((((.((((..(((....))))))).)))))).)))).))))))).)))))))))))))).))..

Structure

-u  ag     guagugccauccacucugca    a     gG       -    C      G    cu   u 
  ga  ggacu                    gggu gcuga  GGAUGGU AGAC GGUGAC UGca  uca u
  ||  |||||                    |||| |||||  ||||||| |||| |||||| ||||  |||  
  cu  ccuga                    ccca cgacu  CCUAUCA UUUG CCACUG AUgu  agu u
gu  -a     --------------------    -     -a       G    C      G    --   a 

Annotation confidence Medium

Genome context

24: 43341207-43341327 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from eca-mir-1193

Mature eca-miR-1193-5p

• Accession: MIMAT0051439
• Description: Equus caballus eca-miR-1193-5p mature miRNA
• Sequence: 42 - GGGAUGGUAGACCGGUGACGUG - 63
• Evidence: not_experimental

Mature eca-miR-1193-3p

• Accession: MIMAT0013124
• Description: Equus caballus eca-miR-1193-3p mature miRNA
• Sequence: 80 - UAGGUCACCCGUUUGACUAUCC - 101
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131