Stem-loop eca-mir-154a

Accession

MI0012879

Description

Equus caballus eca-mir-154a precursor miRNA

Literature search

1 open access papers mention eca-mir-154a
(2 sentences)

Sequence

10655 reads, 27.0 reads per million, 150 experiments

agaUAGGUUAUCCGUGUUGCCUUCGcuuuaucugugaCGAAUCAUACACGGUUCACCUAUUuuu
.(((((((...((((((((.(.((((.......)))).)...)).))))))...)))))))...

Structure

--a       UAU      -  --C U    uu 
   gaUAGGU   CCGUGU UG   C UCGc  u
   |||||||   |||||| ||   | ||||  a
   UUAUCCA   GGCACA AC   G agug  u
uuu       CUU      U  UAA C    uc 

Annotation confidence High

Genome context

24: 43368795-43368858 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from eca-mir-154a

Mature eca-miR-154a-5p

• Accession: MIMAT0013129
• Description: Equus caballus eca-miR-154a-5p mature miRNA
• Sequence: 4 - UAGGUUAUCCGUGUUGCCUUCG - 25
• Evidence: not_experimental

Mature eca-miR-154a-3p

• Accession: MIMAT0051442
• Description: Equus caballus eca-miR-154a-3p mature miRNA
• Sequence: 38 - CGAAUCAUACACGGUUCACCUAUU - 61
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131