Stem-loop eca-mir-323a

Accession

MI0012881

Description

Equus caballus eca-mir-323a precursor miRNA

Literature search

2 open access papers mention eca-mir-323a
(3 sentences)

Sequence

48581 reads, 267.0 reads per million, 209 experiments

uugguacuuggagagAGGUGGUCCGUGGCGCGUUCGcuuuauuuauggcgCACAUUACACGGUCGACCUCUuugcaguaucuaauc
..((((((.(.((((((((.(.(((((..(.((.((((........)))).)).)..))))).).)))))))).))))))).....

Structure

---uu      u g        G U     GC C  U    uua 
     gguacu g agagAGGU G CCGUG  G GU CGcu   u
     |||||| | |||||||| | |||||  | || ||||    
     cuauga c uuUCUCCA C GGCAC  U CA gcgg   u
cuaau      - g        G U     AU A  C    uau 

Annotation confidence High

Genome context

24: 43336934-43337019 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from eca-mir-323a

Mature eca-miR-323a-5p

• Accession: MIMAT0013131
• Description: Equus caballus eca-miR-323a-5p mature miRNA
• Sequence: 16 - AGGUGGUCCGUGGCGCGUUCG - 36
• Evidence: not_experimental

Mature eca-miR-323a-3p

• Accession: MIMAT0013132
• Description: Equus caballus eca-miR-323a-3p mature miRNA
• Sequence: 51 - CACAUUACACGGUCGACCUCU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131