Stem-loop eca-mir-329a

Accession

MI0012882

Description

Equus caballus eca-mir-329a precursor miRNA

Sequence

13743 reads, 21.0 reads per million, 128 experiments

guguuaaucagugguaccugaagAGAGGUUUUCUGGGUUUCUGUUUcuuuaaugaagaugaAACACACCUAGUUAACCUCUUUuccaguaucagaucc
......(((..((((((..(((((((((((..((((((...((((((.((......)).)))))).))))))..)))))))))))..)))))))))..

Structure

guguua   ag      cu           UU      UUC      u  aa 
      auc  ugguac  gaagAGAGGUU  CUGGGU   UGUUUc uu  u
      |||  ||||||  |||||||||||  ||||||   |||||| ||   
      uag  acuaug  cuUUUCUCCAA  GAUCCA   ACAAag ag  g
----cc   --      ac           UU      --C      u  aa 

Annotation confidence High

Genome context

24: 43337982-43338079 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from eca-mir-329a

Mature eca-miR-329a-5p

• Accession: MIMAT0051443
• Description: Equus caballus eca-miR-329a-5p mature miRNA
• Sequence: 24 - AGAGGUUUUCUGGGUUUCUGUUU - 46
• Evidence: not_experimental

Mature eca-miR-329a-3p

• Accession: MIMAT0013133
• Description: Equus caballus eca-miR-329a-3p mature miRNA
• Sequence: 62 - AACACACCUAGUUAACCUCUUU - 83
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131