Stem-loop eca-mir-337

Accession

MI0012883

Description

Equus caballus eca-mir-337 precursor miRNA

Sequence

7 reads, 1 reads per million, 1 experiments

guagucaguagguggggggugaGAACGGCUUCAUACAGGAGCUgaugcgcaguuacccagCUCCUAUGAGAUGCCUUUCCUCaccccuucac
...........((((((((((((((.(((.((.((.((((((((.............)))))))).)).)).))).)).)))))))).))))

Structure

guagucaguag    -        -  C   U  A  C        augcg 
           gugg ggggugaG AA GGC UC UA AGGAGCUg     c
           |||| |||||||| || ||| || || ||||||||     a
           cacu ccccaCUC UU CCG AG GU UCCUCgac     g
-----------    u        C  U   U  A  A        ccauu 

Annotation confidence Not enough data

Genome context

chr24: 42738909-42739000 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from eca-mir-337

Mature eca-miR-337-5p

• Accession: MIMAT0013134
• Description: Equus caballus eca-miR-337-5p mature miRNA
• Sequence: 23 - GAACGGCUUCAUACAGGAGCU - 43
• Evidence: not_experimental

Mature eca-miR-337-3p

• Accession: MIMAT0013135
• Description: Equus caballus eca-miR-337-3p mature miRNA
• Sequence: 61 - CUCCUAUGAGAUGCCUUUCCUC - 82
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131