Stem-loop eca-mir-342

Accession

MI0012884

Description

Equus caballus eca-mir-342 precursor miRNA

Sequence

830 reads, 126 reads per million, 1 experiments

gaaccugggcucaaggugAGGGGUGCUAUCUGUGAUUGAGggacauggcaaauagaauugUCUCACACAGAAAUCGCACCCGUcaccuuggcccgccua
.....(((((.((((((((.((((((..((((((.....((((((...(.....)...)))))).))))))....)))))).)))))))))))))....

Structure

gaacc     u        G      --UA      AUUGA      ugg a 
     ugggc caaggugA GGGUGC    UCUGUG     Gggaca   c a
     ||||| |||||||| ||||||    ||||||     ||||||   | a
     gcccg guuccacU CCCACG    AGACAC     CUCUgu   g u
-aucc     -        G      CUAA      ----A      uaa a 

Annotation confidence High

Genome context

chr24: 42060853-42060951 [+]

Mature eca-miR-342-5p

• Accession: MIMAT0013136
• Description: Equus caballus eca-miR-342-5p mature miRNA
• Sequence: 19 - AGGGGUGCUAUCUGUGAUUGAG - 40
• Evidence: not_experimental

Mature eca-miR-342-3p

• Accession: MIMAT0013137
• Description: Equus caballus eca-miR-342-3p mature miRNA
• Sequence: 61 - UCUCACACAGAAAUCGCACCCGU - 83
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131