Stem-loop eca-mir-345

Accession

MI0012885

Description

Equus caballus eca-mir-345 precursor miRNA

Literature search

1 open access papers mention eca-mir-345
(2 sentences)

Sequence

29367 reads, 46.0 reads per million, 180 experiments

acccaaccccaggucuGCUGACUCCUAGUCCAGUGCUCgugauggcuagugggCCCUGAACUAGGGGUCUGGAGgccuggguuugaauaucgccag
...(((.(((((((((.(.((((((((((.(((.((((((........)))))).))).)))))))))).).))))))))).)))...........

Structure

--------acc   c         G U          C   U      gau 
           caa cccaggucu C GACUCCUAGU CAG GCUCgu   g
           ||| ||||||||| | |||||||||| ||| ||||||    
           guu ggguccgGA G CUGGGGAUCA GUC Cgggug   g
gaccgcuauaa   u         G U          A   C      auc 

Annotation confidence High

Genome context

24: 42657498-42657593 [+]

Mature eca-miR-345-5p

• Accession: MIMAT0013138
• Description: Equus caballus eca-miR-345-5p mature miRNA
• Sequence: 17 - GCUGACUCCUAGUCCAGUGCUC - 38
• Evidence: not_experimental

Mature eca-miR-345-3p

• Accession: MIMAT0013139
• Description: Equus caballus eca-miR-345-3p mature miRNA
• Sequence: 54 - CCCUGAACUAGGGGUCUGGAG - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131