Stem-loop eca-mir-369

Accession

MI0012886

Description

Equus caballus eca-mir-369 precursor miRNA

Literature search

2 open access papers mention eca-mir-369
(2 sentences)

Sequence

146086 reads, 244.0 reads per million, 186 experiments

uugaagggAGAUCGACCGUGUCAUAUUCGCuuuauugacuucgAAUAAUACAUGGUUGAUCUUUUcucgg
.(((.((((((((((((((((..((((((............))))))..)))))))))))))))).))).

Structure

u   a                CA      Cuuua 
 uga gggAGAUCGACCGUGU  UAUUCG     u
 ||| ||||||||||||||||  ||||||      
 gcu UUUUCUAGUUGGUACA  AUAAgc     u
g   c                UA      uucag 

Annotation confidence High

Genome context

24: 43374565-43374634 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from eca-mir-369

Mature eca-miR-369-5p

• Accession: MIMAT0013140
• Description: Equus caballus eca-miR-369-5p mature miRNA
• Sequence: 9 - AGAUCGACCGUGUCAUAUUCGC - 30
• Evidence: not_experimental

Mature eca-miR-369-3p

• Accession: MIMAT0013141
• Description: Equus caballus eca-miR-369-3p mature miRNA
• Sequence: 44 - AAUAAUACAUGGUUGAUCUUUU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131