Stem-loop eca-mir-376a-1

Accession

MI0012888

Description

Equus caballus eca-mir-376a-1 precursor miRNA

Literature search

3 open access papers mention eca-mir-376a-1
(3 sentences)

Sequence

18249 reads, 55.0 reads per million, 145 experiments

uaaaagGUAGAUUCUCCUUCUAUGAGUAcaauauuuaugauuaAUCAUAGAGGAAAAUCCACGUuuuc
.((((.((.((((.((((.((((((...................)))))))))).)))).)).)))).

Structure

u    g  A    C    U      GUAcaaua 
 aaaa GU GAUU UCCU CUAUGA        u
 |||| || |||| |||| ||||||        u
 uuuU CA CUAA AGGA GAUACU        u
c    G  C    A    -      Aauuagua 

Annotation confidence High

Genome context

24: 43350866-43350933 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from eca-mir-376a-1

Mature eca-miR-376a-1-5p

• Accession: MIMAT0051445
• Description: Equus caballus eca-miR-376a-1-5p mature miRNA
• Sequence: 7 - GUAGAUUCUCCUUCUAUGAGUA - 28
• Evidence: not_experimental

Mature eca-miR-376a-3p

• Accession: MIMAT0013143
• Description: Equus caballus eca-miR-376a-3p mature miRNA
• Sequence: 44 - AUCAUAGAGGAAAAUCCACGU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131