Stem-loop eca-mir-376b

Accession

MI0012889

Description

Equus caballus eca-mir-376b precursor miRNA

Sequence

6365 reads, 22.0 reads per million, 134 experiments

ugguauuuaaaagGUGGAUAUUCCUUCUAUGUUUAcgugauucauagauaAUCAUAGAGGAAAAUCCAUGUUuucaguauca
(((((((.((((.((((((.(((((.(((((.(((.(((...)))...))).)))))))))).)))))).)))).)))))))

Structure

       u    g      A     U     U   --c   a 
ugguauu aaaa GUGGAU UUCCU CUAUG UUA   gug  
||||||| |||| |||||| ||||| ||||| |||   ||| u
acuauga uuUU UACCUA AAGGA GAUAC Aau   uac  
       c    G      A     -     U   aga   u 

Annotation confidence High

Genome context

24: 43350488-43350569 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from eca-mir-376b

Mature eca-miR-376b-5p

• Accession: MIMAT0051446
• Description: Equus caballus eca-miR-376b-5p mature miRNA
• Sequence: 14 - GUGGAUAUUCCUUCUAUGUUUA - 35
• Evidence: not_experimental

Mature eca-miR-376b-3p

• Accession: MIMAT0013144
• Description: Equus caballus eca-miR-376b-3p mature miRNA
• Sequence: 51 - AUCAUAGAGGAAAAUCCAUGUU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131