Stem-loop eca-mir-376c

Accession

MI0012890

Description

Equus caballus eca-mir-376c precursor miRNA

Sequence

19238 reads, 23.0 reads per million, 129 experiments

aaaagGUGGAUAUUCCUUCUAUGUUUAuguuguuuaugguuaAACAUAGAGGAAAUUCCACGUUuu
((((.(((((..(((((.(((((((((.............))))))))))))))..))))).))))

Structure

    g     UA     U         uguug 
aaaa GUGGA  UUCCU CUAUGUUUA     u
|||| |||||  ||||| |||||||||     u
uuUU CACCU  AAGGA GAUACAAau     u
    G     UA     -         uggua 

Annotation confidence High

Genome context

24: 43349736-43349801 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from eca-mir-376c

Mature eca-miR-376c-5p

• Accession: MIMAT0051447
• Description: Equus caballus eca-miR-376c-5p mature miRNA
• Sequence: 6 - GUGGAUAUUCCUUCUAUGUUUA - 27
• Evidence: not_experimental

Mature eca-miR-376c-3p

• Accession: MIMAT0013145
• Description: Equus caballus eca-miR-376c-3p mature miRNA
• Sequence: 43 - AACAUAGAGGAAAUUCCACGUU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131