Stem-loop eca-mir-377

Accession

MI0012891

Description

Equus caballus eca-mir-377 precursor miRNA

Literature search

3 open access papers mention eca-mir-377
(3 sentences)

Sequence

12168 reads, 41.0 reads per million, 142 experiments

uugagcAGAGGUUGCCCUUGGUGAAUUCgcuuuauuuauguugaAUCACACAAAGGCAACUUUUGUuug
..((((((((((((((.(((((((.(((((.........).)))))))).))).)))))))))))))).

Structure

uu              C   -    A    - uuu 
  gagcAGAGGUUGCC UUG GUGA UUCg c   a
  |||||||||||||| ||| |||| |||| |   u
  uuUGUUUUCAACGG AAC CACU Aagu g   u
-g              A   A    -    u uau 

Annotation confidence High

Genome context

24: 43371371-43371439 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from eca-mir-377

Mature eca-miR-377-5p

• Accession: MIMAT0061114
• Description: Equus caballus eca-miR-377-5p mature miRNA
• Sequence: 7 - AGAGGUUGCCCUUGGUGAAUUC - 28
• Evidence: not_experimental

Mature eca-miR-377-3p

• Accession: MIMAT0013146
• Description: Equus caballus eca-miR-377-3p mature miRNA
• Sequence: 45 - AUCACACAAAGGCAACUUUUGU - 66
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131