Stem-loop eca-mir-380

Accession

MI0012893

Description

Equus caballus eca-mir-380 precursor miRNA

Sequence

13877 reads, 76.0 reads per million, 159 experiments

aagACGGUUGACCAUAGAGCAUGCGcugucucuaggucgUAUGUAAUAUGGUCCACGUCUU
((((((...(((((((..(((((((((.......)).)))))))..)))))))..))))))

Structure

      GUU       GA       -  gu 
aagACG   GACCAUA  GCAUGCG cu  c
||||||   |||||||  ||||||| ||  u
UUCUGC   CUGGUAU  UGUAUgc gg  c
      -AC       AA       u  au 

Annotation confidence High

Genome context

24: 43336222-43336282 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from eca-mir-380

Mature eca-miR-380-5p

• Accession: MIMAT0051448
• Description: Equus caballus eca-miR-380-5p mature miRNA
• Sequence: 4 - ACGGUUGACCAUAGAGCAUGCG - 25
• Evidence: not_experimental

Mature eca-miR-380-3p

• Accession: MIMAT0013148
• Description: Equus caballus eca-miR-380-3p mature miRNA
• Sequence: 40 - UAUGUAAUAUGGUCCACGUCUU - 61
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131