Stem-loop eca-mir-381

Accession

MI0012894

Description

Equus caballus eca-mir-381 precursor miRNA

Literature search

2 open access papers mention eca-mir-381
(3 sentences)

Sequence

132436 reads, 119.0 reads per million, 146 experiments

uacuuaaAGCGAGGUUGCCCUUUGUAUAUUCgguuuauugacauagaaUAUACAAGGGCAAGCUCUCUGUgagua
((((((.((.(((.((((((((.((((((((.(((....)))...)))))))))))))))).))).)).))))))

Structure

      a  C   G        U        --g   u 
uacuua AG GAG UUGCCCUU GUAUAUUC   guu a
|||||| || ||| |||||||| ||||||||   |||  
augagU UC CUC AACGGGAA CAUAUaag   cag u
      G  U   G        -        aua   u 

Annotation confidence High

Genome context

24: 43354686-43354760 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from eca-mir-381

Mature eca-miR-381-5p

• Accession: MIMAT0051449
• Description: Equus caballus eca-miR-381-5p mature miRNA
• Sequence: 8 - AGCGAGGUUGCCCUUUGUAUAUUC - 31
• Evidence: not_experimental

Mature eca-miR-381-3p

• Accession: MIMAT0013149
• Description: Equus caballus eca-miR-381-3p mature miRNA
• Sequence: 49 - UAUACAAGGGCAAGCUCUCUGU - 70
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131