Stem-loop eca-mir-382

Accession

MI0012895

Description

Equus caballus eca-mir-382 precursor miRNA

Sequence

114 reads, 17 reads per million, 1 experiments

uacuugaagaGAAGUUGUUCGUGGUGGAUUCGcuuuacuuaugacgaaucauucacggacaacacuuuuuucagua
((((.(((((((.(((((((((((..(((((((.........).))))))..)))))))))))..)))))))))))

Structure

    u       -A           UG      - uuu 
uacu gaagaGA  GUUGUUCGUGG  GAUUCG c   a
|||| |||||||  |||||||||||  |||||| |   c
auga cuuuuuu  caacaggcacu  cuaagc g   u
    -       ca           ua      a uau 

Annotation confidence High

Genome context

chr24: 42924862-42924937 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from eca-mir-382

Mature eca-miR-382

• Accession: MIMAT0013150
• Description: Equus caballus eca-miR-382 mature miRNA
• Sequence: 11 - GAAGUUGUUCGUGGUGGAUUCG - 32
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131