Stem-loop eca-mir-410a

Accession

MI0012897

Description

Equus caballus eca-mir-410a precursor miRNA

Literature search

2 open access papers mention eca-mir-410a
(3 sentences)

Sequence

74860 reads, 211.0 reads per million, 150 experiments

ugaggagAGGUUGUCUGUGAUGAGUUCGcuuuauuaaugacgAAUAUAACACAGAUGGCCUGUcuucaguacca
((((((.((((((((((((.((.((((((.........).))))).)).)))))))))))).))))))......

Structure

------      g            A  A     - uuu 
      ugagga AGGUUGUCUGUG UG GUUCG c   a
      |||||| |||||||||||| || ||||| |   u
      acuucU UCCGGUAGACAC AU UAAgc g   u
accaug      G            A  A     a uaa 

Annotation confidence High

Genome context

24: 43374896-43374969 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from eca-mir-410a

Mature eca-miR-410a-5p

• Accession: MIMAT0051450
• Description: Equus caballus eca-miR-410a-5p mature miRNA
• Sequence: 8 - AGGUUGUCUGUGAUGAGUUCG - 28
• Evidence: not_experimental

Mature eca-miR-410a-3p

• Accession: MIMAT0013153
• Description: Equus caballus eca-miR-410a-3p mature miRNA
• Sequence: 43 - AAUAUAACACAGAUGGCCUGU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131