Stem-loop eca-mir-411

Accession

MI0012898

Description

Equus caballus eca-mir-411 precursor miRNA

Literature search

1 open access papers mention eca-mir-411
(1 sentences)

Sequence

1640159 reads, 2903.0 reads per million, 226 experiments

ugguacuuggagagAUAGUAGACCGUAUAGCGUACGcuuuaucugugacgUAUGUAACACGGUCCACUAACccucaguauca
(((((((..(((.(.((((.((((((...((((((((.........).)))))))...)))))).)))).).))))))))))

Structure

       ug   a A    A      AUA       - uuu 
ugguacu  gag g UAGU GACCGU   GCGUACG c   a
|||||||  ||| | |||| ||||||   ||||||| |   u
acuauga  cuc C AUCA CUGGCA   UGUAUgc g   c
       --   c A    C      CAA       a ugu 

Annotation confidence High

Genome context

24: 43334525-43334606 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from eca-mir-411

Mature eca-miR-411-5p

• Accession: MIMAT0013154
• Description: Equus caballus eca-miR-411-5p mature miRNA
• Sequence: 15 - AUAGUAGACCGUAUAGCGUACG - 36
• Evidence: experimental ; Illumina [1]

Mature eca-miR-411-3p

• Accession: MIMAT0061117
• Description: Equus caballus eca-miR-411-3p mature miRNA
• Sequence: 51 - UAUGUAACACGGUCCACUAAC - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131