Stem-loop eca-mir-412

Accession

MI0012899

Description

Equus caballus eca-mir-412 precursor miRNA

Literature search

1 open access papers mention eca-mir-412
(1 sentences)

Sequence

20697 reads, 46.0 reads per million, 134 experiments

ggguacaggagggaUGGUCGACCAGUUGGAAAGUAAUuguuucuaauguaCUUCACCUGGUCCACUAGCCGUccguaccc
((((((.(((.((.((((.((((((.(((..((((((((....)))).))))))).)))))).)))).)).)))))))))

Structure

      a   g  a    C      U   AA    -    u 
ggguac gga gg UGGU GACCAG UGG  AGUA AUug u
|||||| ||| || |||| |||||| |||  |||| ||||  
cccaug ccU CC AUCA CUGGUC ACU  UCau uaau u
      -   G  G    C      C   --    g    c 

Annotation confidence High

Genome context

24: 43374416-43374495 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from eca-mir-412

Mature eca-miR-412-5p

• Accession: MIMAT0051451
• Description: Equus caballus eca-miR-412-5p mature miRNA
• Sequence: 15 - UGGUCGACCAGUUGGAAAGUAAU - 37
• Evidence: not_experimental

Mature eca-miR-412-3p

• Accession: MIMAT0013155
• Description: Equus caballus eca-miR-412-3p mature miRNA
• Sequence: 51 - CUUCACCUGGUCCACUAGCCGU - 72
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131