Stem-loop eca-mir-432

Accession

MI0012901

Description

Equus caballus eca-mir-432 precursor miRNA

Literature search

2 open access papers mention eca-mir-432
(14 sentences)

Sequence

110728 reads, 338.0 reads per million, 221 experiments

ugcgugacuccuccaggUCUUGGAGUAGGUCAUUGGGUGGauccuuuauuucccuaugugggccaCUGGAUGGCUCCUCCAUGUCUUGG
............(((((.(.(((((..(((((((.(((((.(((..(((......))).)))))))).))))))).))))).).)))))

Structure

ugcgugacuccu     U U     UA       G     a   uu   uu 
            ccagg C UGGAG  GGUCAUU GGUGG ucc  uau  c
            ||||| | |||||  ||||||| ||||| |||  |||   
            GGUUC G ACCUC  UCGGUAG UCacc ggg  gua  c
------------     U U     -C       G     -   -u   uc 

Annotation confidence Medium

Genome context

24: 43187301-43187389 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-432

Mature eca-miR-432-5p

• Accession: MIMAT0013157
• Description: Equus caballus eca-miR-432-5p mature miRNA
• Sequence: 18 - UCUUGGAGUAGGUCAUUGGGUGG - 40
• Evidence: not_experimental

Mature eca-miR-432-3p

• Accession: MIMAT0051452
• Description: Equus caballus eca-miR-432-3p mature miRNA
• Sequence: 66 - CUGGAUGGCUCCUCCAUGUCUUGG - 89
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131