Stem-loop eca-mir-487a

Accession

MI0012904

Description

Equus caballus eca-mir-487a precursor miRNA

Literature search

2 open access papers mention eca-mir-487a
(2 sentences)

Sequence

19153 reads, 51.0 reads per million, 151 experiments

gguacuugaagaGUGGUUAUCCCUGCUGUGUUCGcuguauuuaugacgAAUCAUACAGGGACAUCCAGUUuuucaguauc
((((((.(((((.(((...((((((.(((((((((.........).)))).))))))))))...))).))))).))))))

Structure

      u     G   UUA      C    -    - ugu 
gguacu gaaga UGG   UCCCUG UGUG UUCG c   a
|||||| ||||| |||   |||||| |||| |||| |   u
cuauga uuuUU ACC   AGGGAC AUAC AAgc g   u
      c     G   UAC      -    U    a uau 

Annotation confidence High

Genome context

24: 43360624-43360703 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from eca-mir-487a

Mature eca-miR-487a-5p

• Accession: MIMAT0051454
• Description: Equus caballus eca-miR-487a-5p mature miRNA
• Sequence: 13 - GUGGUUAUCCCUGCUGUGUUCG - 34
• Evidence: not_experimental

Mature eca-miR-487a-3p

• Accession: MIMAT0013161
• Description: Equus caballus eca-miR-487a-3p mature miRNA
• Sequence: 49 - AAUCAUACAGGGACAUCCAGUU - 70
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131