Stem-loop eca-mir-487b

Accession

MI0012905

Description

Equus caballus eca-mir-487b precursor miRNA

Literature search

1 open access papers mention eca-mir-487b
(1 sentences)

Sequence

99359 reads, 351.0 reads per million, 195 experiments

uugguacuuggagaGUGGUUAUCCCUGUCCUGUUCGuuuuaauuacgucgAAUCGUACAGGGUCAUCCACUUuuucaguaucaa
.(((((((.(((((((((....((((((.(.(((((............))))).).))))))....))))))))).))))))).

Structure

u       u         UUAU      C U     uuuua 
 ugguacu ggagaGUGG    CCCUGU C GUUCG     a
 ||||||| |||||||||    |||||| | |||||      
 acuauga uuuUUCACC    GGGACA G UAAgc     u
a       c         UACU      U C     ugcau 

Annotation confidence High

Genome context

24: 43355152-43355235 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from eca-mir-487b

Mature eca-miR-487b-5p

• Accession: MIMAT0051455
• Description: Equus caballus eca-miR-487b-5p mature miRNA
• Sequence: 15 - GUGGUUAUCCCUGUCCUGUUCG - 36
• Evidence: not_experimental

Mature eca-miR-487b-3p

• Accession: MIMAT0013162
• Description: Equus caballus eca-miR-487b-3p mature miRNA
• Sequence: 51 - AAUCGUACAGGGUCAUCCACUU - 72
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131