Stem-loop eca-mir-493b

Accession

MI0012906

Description

Equus caballus eca-mir-493b precursor miRNA

Literature search

1 open access papers mention eca-mir-493b
(2 sentences)

Sequence

302 reads, 46 reads per million, 1 experiments

cuggccuccagggccuuguacaugguaggcuuucauucauucguuugcacauucggUGAAGGUCUUCCGUGUGCCAGGcucugugccag
(((((...((((((((.((((((((.(((((((((((.................))))))))))).)))))))).)))))))).)))))

Structure

     cuc        u        u           cauucgu 
cuggc   cagggccu guacaugg aggcuuucauu       u
|||||   |||||||| |||||||| |||||||||||       u
gaccg   gucucGGA CGUGUGCC UCUGGAAGUgg       g
     --u        C        U           cuuacac 

Annotation confidence Not enough data

Genome context

chr24: 42729572-42729660 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-493b

Mature eca-miR-493b

• Accession: MIMAT0013163
• Description: Equus caballus eca-miR-493b mature miRNA
• Sequence: 57 - UGAAGGUCUUCCGUGUGCCAGG - 78
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131