Stem-loop eca-mir-494

Accession

MI0012907

Description

Equus caballus eca-mir-494 precursor miRNA

Literature search

7 open access papers mention eca-mir-494
(42 sentences)

Sequence

129194 reads, 137.0 reads per million, 162 experiments

gauacucgaaggagAGGUUGUCCGUGUUGUCUUCUCUuuauuuaugaUGAAACAUACACGGGAAACCUCuuuuuuaguauc
((((((.((((((((((((.((((((((((.(((((.........)).)))))).))))))).))))))))))))))))))

Structure

      c            G       -   C   -  Uuu 
gauacu gaaggagAGGUU UCCGUGU UGU UUC UC   a
|||||| |||||||||||| ||||||| ||| ||| ||   u
cuauga uuuuuuCUCCAA GGGCACA ACA AAG ag   u
      -            A       U   -   U  uau 

Annotation confidence High

Genome context

24: 43340801-43340881 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from eca-mir-494

Mature eca-miR-494-5p

• Accession: MIMAT0051457
• Description: Equus caballus eca-miR-494-5p mature miRNA
• Sequence: 15 - AGGUUGUCCGUGUUGUCUUCUCU - 37
• Evidence: not_experimental

Mature eca-miR-494-3p

• Accession: MIMAT0013164
• Description: Equus caballus eca-miR-494-3p mature miRNA
• Sequence: 48 - UGAAACAUACACGGGAAACCUC - 69
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131